IL_7JQL_260

3D structure

PDB id

7JQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-001, mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQL_260 not in the Motif Atlas

Geometric match to IL_4WF9_091

Geometric discrepancy: 0.1687

The information below is about IL_4WF9_091

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

7JQL|1|2A|U|2457
7JQL|1|2A|G|2458
7JQL|1|2A|A|2459
*
7JQL|1|2A|U|2493
7JQL|1|2A|G|2494

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2Q

50S ribosomal protein L16

Chain 2z

Bac7-001