IL_7JQL_262

3D structure

PDB id

7JQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-001, mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCGAGC*GCGGCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQL_262 not in the Motif Atlas

Geometric match to IL_5J7L_057

Geometric discrepancy: 0.373

The information below is about IL_5J7L_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

7JQL|1|2A|C|2466
7JQL|1|2A|C|2467
7JQL|1|2A|G|2468
7JQL|1|2A|A|2469
7JQL|1|2A|G|2470
7JQL|1|2A|C|2471
*
7JQL|1|2A|G|2479
7JQL|1|2A|C|2480
7JQL|1|2A|G|2481
7JQL|1|2A|G|2482
7JQL|1|2A|C|2483
7JQL|1|2A|G|2484

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2Q

50S ribosomal protein L16