IL_7JQL_292

3D structure

PDB id

7JQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-001, mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GACAACC*GGCUAAUC

Length

15 nucleotides

Bulged bases

7JQL|1|2a|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQL_292 not in the Motif Atlas

Homologous match to IL_6CZR_121

Geometric discrepancy: 0.1909

The information below is about IL_6CZR_121

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.5

Basepair signature

cWW-L-R-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

7JQL|1|2a|G|148
7JQL|1|2a|A|149
7JQL|1|2a|C|150
7JQL|1|2a|A|151
7JQL|1|2a|A|152
7JQL|1|2a|C|153
7JQL|1|2a|C|154
*
7JQL|1|2a|G|167
7JQL|1|2a|G|168
7JQL|1|2a|C|169
7JQL|1|2a|U|170
7JQL|1|2a|A|171
7JQL|1|2a|A|172
7JQL|1|2a|U|173
7JQL|1|2a|C|174

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2t

30S ribosomal protein S20