IL_7JQL_375

3D structure

PDB id

7JQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-001, mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAGUAG*CGCAGAUACC

Length

17 nucleotides

Bulged bases

7JQL|1|2a|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQL_375 not in the Motif Atlas

Geometric match to IL_4V88_508

Geometric discrepancy: 0.2629

The information below is about IL_4V88_508

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_99095.1

Basepair signature

cWW-tSS-L-tSH-L-R-R-R-L-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

7JQL|1|2a|G|682
7JQL|1|2a|G|683
7JQL|1|2a|A|684
7JQL|1|2a|G|685
7JQL|1|2a|U|686
7JQL|1|2a|A|687
7JQL|1|2a|G|688
*
7JQL|1|2a|C|699
7JQL|1|2a|G|700
7JQL|1|2a|C|701
7JQL|1|2a|A|702
7JQL|1|2a|G|703
7JQL|1|2a|A|704
7JQL|1|2a|U|705
7JQL|1|2a|A|706
7JQL|1|2a|C|707
7JQL|1|2a|C|708

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2k

30S ribosomal protein S11

Chain 2r

30S ribosomal protein S18