IL_7JQM_170
3D structure
- PDB id
- 7JQM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-002, mRNA, and deacylated P-site tRNA at 3.05A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.05 Å
Loop
- Sequence
- GGAG*UGAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7JQM_170 not in the Motif Atlas
- Homologous match to IL_5J7L_062
- Geometric discrepancy: 0.112
- The information below is about IL_5J7L_062
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.15
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 34
Unit IDs
7JQM|1|1a|G|1416
7JQM|1|1a|G|1417
7JQM|1|1a|A|1418
7JQM|1|1a|G|1419
*
7JQM|1|1a|U|1481
7JQM|1|1a|G|1482
7JQM|1|1a|A|1483
7JQM|1|1a|C|1484
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1l
- 30S ribosomal protein S12
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