IL_7JQM_237

3D structure

PDB id

7JQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-002, mRNA, and deacylated P-site tRNA at 3.05A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

7JQM|1|2A|G|1801, 7JQM|1|2A|G|1816, 7JQM|1|2A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQM_237 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0575

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7JQM|1|2A|U|1798
7JQM|1|2A|G|1799
7JQM|1|2A|C|1800
7JQM|1|2A|G|1801
7JQM|1|2A|A|1802
7JQM|1|2A|A|1803
7JQM|1|2A|C|1804
*
7JQM|1|2A|G|1813
7JQM|1|2A|G|1814
7JQM|1|2A|A|1815
7JQM|1|2A|G|1816
7JQM|1|2A|G|1817
7JQM|1|2A|U|1818
7JQM|1|2A|A|1819
7JQM|1|2A|U|1820
7JQM|1|2A|A|1821

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA