IL_7JQM_269

3D structure

PDB id

7JQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-002, mRNA, and deacylated P-site tRNA at 3.05A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CCUAGUAC*GGACCGG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQM_269 not in the Motif Atlas

Geometric match to IL_5J7L_289

Geometric discrepancy: 0.3661

The information below is about IL_5J7L_289

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

7JQM|1|2A|C|2651
7JQM|1|2A|C|2652
7JQM|1|2A|U|2653
7JQM|1|2A|A|2654
7JQM|1|2A|G|2655
7JQM|1|2A|U|2656
7JQM|1|2A|A|2657
7JQM|1|2A|C|2658
*
7JQM|1|2A|G|2663
7JQM|1|2A|G|2664
7JQM|1|2A|A|2665
7JQM|1|2A|C|2666
7JQM|1|2A|C|2667
7JQM|1|2A|G|2668
7JQM|1|2A|G|2669

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2H

50S ribosomal protein L6