3D structure

PDB id
7JSS (explore in PDB, NAKB, or RNA 3D Hub)
Description
ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GAAC*GAGUGAAAAAGAAC
Length
18 nucleotides
Bulged bases
7JSS|1|1|A|504, 7JSS|1|1|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7JSS_011 not in the Motif Atlas
Geometric match to IL_5J7L_255
Geometric discrepancy: 0.1072
The information below is about IL_5J7L_255
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_81516.2
Basepair signature
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
Number of instances in this motif group
6

Unit IDs

7JSS|1|1|G|481
7JSS|1|1|A|482
7JSS|1|1|A|483
7JSS|1|1|C|484
*
7JSS|1|1|G|496
7JSS|1|1|A|497
7JSS|1|1|G|498
7JSS|1|1|U|499
7JSS|1|1|G|500
7JSS|1|1|A|501
7JSS|1|1|A|502
7JSS|1|1|A|503
7JSS|1|1|A|504
7JSS|1|1|A|505
7JSS|1|1|G|506
7JSS|1|1|A|507
7JSS|1|1|A|508
7JSS|1|1|C|509

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain s
50S ribosomal protein L22
Chain u
50S ribosomal protein L24

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.4401 s
Application loaded.