3D structure

PDB id
7JSS (explore in PDB, NAKB, or RNA 3D Hub)
Description
ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GAGAAC*GAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7JSS_060 not in the Motif Atlas
Homologous match to IL_5J7L_304
Geometric discrepancy: 0.0822
The information below is about IL_5J7L_304
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_12566.4
Basepair signature
cWW-L-tHS-L-cWW-L
Number of instances in this motif group
5

Unit IDs

7JSS|1|1|G|1651
7JSS|1|1|A|1652
7JSS|1|1|G|1653
7JSS|1|1|A|1654
7JSS|1|1|A|1655
7JSS|1|1|C|1656
*
7JSS|1|1|G|2004
7JSS|1|1|A|2005
7JSS|1|1|C|2006

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain c
50S ribosomal protein L3
Chain n
50S ribosomal protein L17

Coloring options:


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