IL_7JSS_072

3D structure

PDB id

7JSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUAG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JSS_072 not in the Motif Atlas

Homologous match to IL_4WF9_075

Geometric discrepancy: 0.2473

The information below is about IL_4WF9_075

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

7JSS|1|1|U|1864
7JSS|1|1|U|1865
7JSS|1|1|A|1866
7JSS|1|1|G|1867
*
7JSS|1|1|C|1874
7JSS|1|1|G|1875
7JSS|1|1|A|1876
7JSS|1|1|A|1877
7JSS|1|1|G|1878

Current chains

Chain 1

23S ribosomal RNA

Nearby chains