3D structure

PDB id
7JSS (explore in PDB, NAKB, or RNA 3D Hub)
Description
ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GC*GCAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7JSS_073 not in the Motif Atlas
Geometric match to IL_4WF9_076
Geometric discrepancy: 0.1015
The information below is about IL_4WF9_076
Detailed Annotation
Bulged stacked bases
Broad Annotation
No text annotation
Motif group
IL_22551.3
Basepair signature
cWW-L-cWW-L
Number of instances in this motif group
10

Unit IDs

7JSS|1|1|G|1933
7JSS|1|1|C|1934
*
7JSS|1|1|G|1964
7JSS|1|1|C|1965
7JSS|1|1|A|1966
7JSS|1|1|C|1967

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 5
Transfer RNA; tRNA
Chain 8
Peptidyl-tRNA hydrolase ArfB

Coloring options:


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