3D structure

PDB id
7JSS (explore in PDB, NAKB, or RNA 3D Hub)
Description
ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
ACG*CUAU
Length
7 nucleotides
Bulged bases
7JSS|1|1|C|2055, 7JSS|1|1|U|2613, 7JSS|1|1|A|2614
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7JSS_076 not in the Motif Atlas
Homologous match to IL_5J7L_321
Geometric discrepancy: 0.1359
The information below is about IL_5J7L_321
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_83389.2
Basepair signature
cWW-cWW
Number of instances in this motif group
5

Unit IDs

7JSS|1|1|A|2054
7JSS|1|1|C|2055
7JSS|1|1|G|2056
*
7JSS|1|1|C|2612
7JSS|1|1|U|2613
7JSS|1|1|A|2614
7JSS|1|1|U|2615

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain B
50S ribosomal protein L32
Chain c
50S ribosomal protein L3
Chain s
50S ribosomal protein L22

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