IL_7JSS_081

3D structure

PDB id

7JSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCCU*AUGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JSS_081 not in the Motif Atlas

Geometric match to IL_6JDV_002

Geometric discrepancy: 0.3348

The information below is about IL_6JDV_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7JSS|1|1|G|2102
7JSS|1|1|C|2103
7JSS|1|1|C|2104
7JSS|1|1|U|2105
*
7JSS|1|1|A|2184
7JSS|1|1|U|2185
7JSS|1|1|G|2186
7JSS|1|1|U|2187

Current chains

Chain 1

23S ribosomal RNA

Nearby chains