IL_7JSS_087

3D structure

PDB id

7JSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AG*CCU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JSS_087 not in the Motif Atlas

Geometric match to IL_4WF9_089

Geometric discrepancy: 0.1595

The information below is about IL_4WF9_089

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

7JSS|1|1|A|2453
7JSS|1|1|G|2454
*
7JSS|1|1|C|2498
7JSS|1|1|C|2499
7JSS|1|1|U|2500

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 8

Peptidyl-tRNA hydrolase ArfB

Chain c

50S ribosomal protein L3