IL_7JSS_090

3D structure

PDB id

7JSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

7JSS|1|1|U|2491

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JSS_090 not in the Motif Atlas

Homologous match to IL_7RQB_094

Geometric discrepancy: 0.136

The information below is about IL_7RQB_094

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_92788.2

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

14

Unit IDs

7JSS|1|1|A|2459
7JSS|1|1|U|2460
7JSS|1|1|A|2461
*
7JSS|1|1|U|2489
7JSS|1|1|G|2490
7JSS|1|1|U|2491
7JSS|1|1|U|2492
7JSS|1|1|U|2493

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 8

Peptidyl-tRNA hydrolase ArfB

Chain m

50S ribosomal protein L16