IL_7JSS_133

3D structure

PDB id

7JSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

7JSS|1|3|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JSS_133 not in the Motif Atlas

Homologous match to IL_5J7L_022

Geometric discrepancy: 0.3357

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7JSS|1|3|G|446
7JSS|1|3|G|447
7JSS|1|3|A|448
7JSS|1|3|G|449
7JSS|1|3|G|450
*
7JSS|1|3|C|483
7JSS|1|3|G|484
7JSS|1|3|U|485
7JSS|1|3|U|486
7JSS|1|3|A|487
7JSS|1|3|C|488

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain I

30S ribosomal protein S4

Chain U

30S ribosomal protein S16