IL_7JSZ_072

3D structure

PDB id

7JSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUAG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JSZ_072 not in the Motif Atlas

Homologous match to IL_4WF9_075

Geometric discrepancy: 0.2803

The information below is about IL_4WF9_075

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_77691.7

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

7JSZ|1|1|U|1864
7JSZ|1|1|U|1865
7JSZ|1|1|A|1866
7JSZ|1|1|G|1867
*
7JSZ|1|1|C|1874
7JSZ|1|1|G|1875
7JSZ|1|1|A|1876
7JSZ|1|1|A|1877
7JSZ|1|1|G|1878

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L1