IL_7JSZ_118

3D structure

PDB id

7JSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGG*CGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JSZ_118 not in the Motif Atlas

Geometric match to IL_3LOA_003

Geometric discrepancy: 0.3709

The information below is about IL_3LOA_003

Detailed Annotation

Decoding loop with one bulged A

Broad Annotation

Decoding loop with one bulged A

Motif group

IL_08770.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

5

Unit IDs

7JSZ|1|3|C|67
7JSZ|1|3|G|68
7JSZ|1|3|G|69
*
7JSZ|1|3|C|99
7JSZ|1|3|G|100
7JSZ|1|3|A|101
7JSZ|1|3|G|102

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain Y

30S ribosomal protein S20