IL_7JSZ_134

3D structure

PDB id

7JSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

7JSZ|1|3|U|485

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JSZ_134 not in the Motif Atlas

Geometric match to IL_5J7L_022

Geometric discrepancy: 0.3031

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7JSZ|1|3|G|446
7JSZ|1|3|G|447
7JSZ|1|3|A|448
7JSZ|1|3|G|449
7JSZ|1|3|G|450
*
7JSZ|1|3|C|483
7JSZ|1|3|G|484
7JSZ|1|3|U|485
7JSZ|1|3|U|486
7JSZ|1|3|A|487
7JSZ|1|3|C|488

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain I

30S ribosomal protein S4

Chain U

30S ribosomal protein S16