IL_7JSZ_169

3D structure

PDB id

7JSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JSZ_169 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.248

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7JSZ|1|3|C|1303
7JSZ|1|3|G|1304
7JSZ|1|3|G|1305
7JSZ|1|3|A|1306
7JSZ|1|3|U|1307
7JSZ|1|3|U|1308
*
7JSZ|1|3|A|1329
7JSZ|1|3|U|1330
7JSZ|1|3|G|1331
7JSZ|1|3|A|1332
7JSZ|1|3|A|1333
7JSZ|1|3|G|1334

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain R

30S ribosomal protein S13

Chain X

30S ribosomal protein S19