IL_7JSZ_188

3D structure

PDB id

7JSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAC*GUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JSZ_188 not in the Motif Atlas

Geometric match to IL_8AF0_001

Geometric discrepancy: 0.3224

The information below is about IL_8AF0_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

7JSZ|1|1|C|1531
7JSZ|1|1|A|1532
7JSZ|1|1|C|1533
*
7JSZ|1|1|G|1538
7JSZ|1|1|U|1539
7JSZ|1|1|G|1540

Current chains

Chain 1

23S ribosomal RNA

Nearby chains