IL_7JSZ_194

3D structure

PDB id

7JSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAGGCUUUGAAGU*AUGGAGCCGACCUUGAAAUAC

Length

35 nucleotides

Bulged bases

7JSZ|1|1|G|2127, 7JSZ|1|1|U|2131, 7JSZ|1|1|U|2132, 7JSZ|1|1|U|2167, 7JSZ|1|1|G|2168, 7JSZ|1|1|U|2172, 7JSZ|1|1|A|2173

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7JSZ|1|1|G|2124
7JSZ|1|1|G|2125
7JSZ|1|1|A|2126
7JSZ|1|1|G|2127
7JSZ|1|1|G|2128
7JSZ|1|1|C|2129
7JSZ|1|1|U|2130
7JSZ|1|1|U|2131
7JSZ|1|1|U|2132
7JSZ|1|1|G|2133
7JSZ|1|1|A|2134
7JSZ|1|1|A|2135
7JSZ|1|1|G|2136
7JSZ|1|1|U|2137
*
7JSZ|1|1|A|2154
7JSZ|1|1|U|2155
7JSZ|1|1|G|2156
7JSZ|1|1|G|2157
7JSZ|1|1|A|2158
7JSZ|1|1|G|2159
7JSZ|1|1|C|2160
7JSZ|1|1|C|2161
7JSZ|1|1|G|2162
7JSZ|1|1|A|2163
7JSZ|1|1|C|2164
7JSZ|1|1|C|2165
7JSZ|1|1|U|2166
7JSZ|1|1|U|2167
7JSZ|1|1|G|2168
7JSZ|1|1|A|2169
7JSZ|1|1|A|2170
7JSZ|1|1|A|2171
7JSZ|1|1|U|2172
7JSZ|1|1|A|2173
7JSZ|1|1|C|2174

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L1