IL_7JT1_069

3D structure

PDB id

7JT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound (+9-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

7JT1|1|1|A|1801, 7JT1|1|1|C|1816, 7JT1|1|1|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JT1_069 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.1036

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7JT1|1|1|U|1798
7JT1|1|1|G|1799
7JT1|1|1|C|1800
7JT1|1|1|A|1801
7JT1|1|1|A|1802
7JT1|1|1|A|1803
7JT1|1|1|C|1804
*
7JT1|1|1|G|1813
7JT1|1|1|G|1814
7JT1|1|1|A|1815
7JT1|1|1|C|1816
7JT1|1|1|G|1817
7JT1|1|1|U|1818
7JT1|1|1|A|1819
7JT1|1|1|U|1820
7JT1|1|1|A|1821

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain b

50S ribosomal protein L2