IL_7JT1_073

3D structure

PDB id

7JT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound (+9-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUAG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JT1_073 not in the Motif Atlas

Homologous match to IL_5J7L_317

Geometric discrepancy: 0.1872

The information below is about IL_5J7L_317

Detailed Annotation

UAA/GAN related

Broad Annotation

No text annotation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

7JT1|1|1|U|1864
7JT1|1|1|U|1865
7JT1|1|1|A|1866
7JT1|1|1|G|1867
*
7JT1|1|1|C|1874
7JT1|1|1|G|1875
7JT1|1|1|A|1876
7JT1|1|1|A|1877
7JT1|1|1|G|1878

Current chains

Chain 1

23S ribosomal RNA

Nearby chains