IL_7JT1_186

3D structure

PDB id

7JT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound (+9-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAGGCUUUGAAGUGU*GCAUGGAGCCGACCUUGAAAUAC

Length

39 nucleotides

Bulged bases

7JT1|1|1|U|2130, 7JT1|1|1|U|2131, 7JT1|1|1|U|2132, 7JT1|1|1|A|2135, 7JT1|1|1|U|2155, 7JT1|1|1|A|2158, 7JT1|1|1|C|2160, 7JT1|1|1|C|2165, 7JT1|1|1|U|2167, 7JT1|1|1|G|2168, 7JT1|1|1|A|2171, 7JT1|1|1|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7JT1|1|1|G|2124
7JT1|1|1|G|2125
7JT1|1|1|A|2126
7JT1|1|1|G|2127
7JT1|1|1|G|2128
7JT1|1|1|C|2129
7JT1|1|1|U|2130
7JT1|1|1|U|2131
7JT1|1|1|U|2132
7JT1|1|1|G|2133
7JT1|1|1|A|2134
7JT1|1|1|A|2135
7JT1|1|1|G|2136
7JT1|1|1|U|2137
7JT1|1|1|G|2138
7JT1|1|1|U|2139
*
7JT1|1|1|G|2152
7JT1|1|1|C|2153
7JT1|1|1|A|2154
7JT1|1|1|U|2155
7JT1|1|1|G|2156
7JT1|1|1|G|2157
7JT1|1|1|A|2158
7JT1|1|1|G|2159
7JT1|1|1|C|2160
7JT1|1|1|C|2161
7JT1|1|1|G|2162
7JT1|1|1|A|2163
7JT1|1|1|C|2164
7JT1|1|1|C|2165
7JT1|1|1|U|2166
7JT1|1|1|U|2167
7JT1|1|1|G|2168
7JT1|1|1|A|2169
7JT1|1|1|A|2170
7JT1|1|1|A|2171
7JT1|1|1|U|2172
7JT1|1|1|A|2173
7JT1|1|1|C|2174

Current chains

Chain 1

23S ribosomal RNA

Nearby chains