IL_7JT2_031

3D structure

PDB id

7JT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome stalled on long mRNA with ArfB bound in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGG*UACC

Length

7 nucleotides

Bulged bases

7JT2|1|1|A|896

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JT2_031 not in the Motif Atlas

Geometric match to IL_4WF9_003

Geometric discrepancy: 0.3536

The information below is about IL_4WF9_003

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_82096.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

7JT2|1|1|G|879
7JT2|1|1|G|880
7JT2|1|1|G|881
*
7JT2|1|1|U|895
7JT2|1|1|A|896
7JT2|1|1|C|897
7JT2|1|1|C|898

Current chains

Chain 1

23S ribosomal RNA

Nearby chains