IL_7JT2_036

3D structure

PDB id

7JT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome stalled on long mRNA with ArfB bound in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

7JT2|1|1|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JT2_036 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.1731

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

7JT2|1|1|U|1018
7JT2|1|1|U|1019
7JT2|1|1|A|1020
7JT2|1|1|A|1021
7JT2|1|1|G|1022
7JT2|1|1|U|1023
7JT2|1|1|G|1024
*
7JT2|1|1|C|1140
7JT2|1|1|U|1141
7JT2|1|1|A|1142
7JT2|1|1|A|1143
7JT2|1|1|A|1144

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L36

Chain j

50S ribosomal protein L13