IL_7JT2_099

3D structure

PDB id

7JT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome stalled on long mRNA with ArfB bound in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JT2_099 not in the Motif Atlas

Geometric match to IL_4WF9_100

Geometric discrepancy: 0.1334

The information below is about IL_4WF9_100

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.5

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7JT2|1|1|C|2652
7JT2|1|1|U|2653
7JT2|1|1|A|2654
7JT2|1|1|G|2655
7JT2|1|1|U|2656
7JT2|1|1|A|2657
7JT2|1|1|C|2658
*
7JT2|1|1|G|2663
7JT2|1|1|G|2664
7JT2|1|1|A|2665
7JT2|1|1|C|2666
7JT2|1|1|C|2667
7JT2|1|1|G|2668

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain f

50S ribosomal protein L6