IL_7JT2_134

3D structure

PDB id

7JT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome stalled on long mRNA with ArfB bound in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

7JT2|1|3|U|485

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JT2_134 not in the Motif Atlas

Homologous match to IL_5J7L_022

Geometric discrepancy: 0.185

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7JT2|1|3|G|446
7JT2|1|3|G|447
7JT2|1|3|A|448
7JT2|1|3|G|449
7JT2|1|3|G|450
*
7JT2|1|3|C|483
7JT2|1|3|G|484
7JT2|1|3|U|485
7JT2|1|3|U|486
7JT2|1|3|A|487
7JT2|1|3|C|488

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain I

30S ribosomal protein S4

Chain U

30S ribosomal protein S16