IL_7JT2_185

3D structure

PDB id

7JT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome stalled on long mRNA with ArfB bound in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAGGCUUUGAAGUGU*GCAUGGAGCCGACCUUGAAAUAC

Length

39 nucleotides

Bulged bases

7JT2|1|1|U|2131, 7JT2|1|1|U|2132, 7JT2|1|1|A|2135, 7JT2|1|1|G|2138, 7JT2|1|1|U|2155, 7JT2|1|1|A|2158, 7JT2|1|1|C|2165, 7JT2|1|1|U|2167, 7JT2|1|1|A|2171, 7JT2|1|1|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7JT2|1|1|G|2124
7JT2|1|1|G|2125
7JT2|1|1|A|2126
7JT2|1|1|G|2127
7JT2|1|1|G|2128
7JT2|1|1|C|2129
7JT2|1|1|U|2130
7JT2|1|1|U|2131
7JT2|1|1|U|2132
7JT2|1|1|G|2133
7JT2|1|1|A|2134
7JT2|1|1|A|2135
7JT2|1|1|G|2136
7JT2|1|1|U|2137
7JT2|1|1|G|2138
7JT2|1|1|U|2139
*
7JT2|1|1|G|2152
7JT2|1|1|C|2153
7JT2|1|1|A|2154
7JT2|1|1|U|2155
7JT2|1|1|G|2156
7JT2|1|1|G|2157
7JT2|1|1|A|2158
7JT2|1|1|G|2159
7JT2|1|1|C|2160
7JT2|1|1|C|2161
7JT2|1|1|G|2162
7JT2|1|1|A|2163
7JT2|1|1|C|2164
7JT2|1|1|C|2165
7JT2|1|1|U|2166
7JT2|1|1|U|2167
7JT2|1|1|G|2168
7JT2|1|1|A|2169
7JT2|1|1|A|2170
7JT2|1|1|A|2171
7JT2|1|1|U|2172
7JT2|1|1|A|2173
7JT2|1|1|C|2174

Current chains

Chain 1

23S ribosomal RNA

Nearby chains