IL_7K00_019

3D structure

PDB id

7K00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome at 2 Angstrom Resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

1.98 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7K00_019 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1066

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

7K00|1|A|U|409
7K00|1|A|G|410
7K00|1|A|A|411
7K00|1|A|A|412
7K00|1|A|G|413
7K00|1|A|A|414
7K00|1|A|A|415
7K00|1|A|G|416
*
7K00|1|A|U|427
7K00|1|A|G|428
7K00|1|A|U|429
7K00|1|A|A|430
7K00|1|A|A|431
7K00|1|A|A|432
7K00|1|A|G|433

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S4