3D structure

PDB id
7K00 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Bacterial Ribosome at 2 Angstrom Resolution
Experimental method
ELECTRON MICROSCOPY
Resolution
1.98 Å

Loop

Sequence
GGAACUG*CUAAGUAC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7K00_070 not in the Motif Atlas
Homologous match to IL_5J7L_250
Geometric discrepancy: 0.0389
The information below is about IL_5J7L_250
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.10
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

7K00|1|a|G|188
7K00|1|a|G|189
7K00|1|a|A|190
7K00|1|a|A|191
7K00|1|a|C|192
7K00|1|a|U|193
7K00|1|a|G|194
*
7K00|1|a|C|201
7K00|1|a|U|202
7K00|1|a|A|203
7K00|1|a|A|204
7K00|1|a|G|205
7K00|1|a|U|206
7K00|1|a|A|207
7K00|1|a|C|208

Current chains

Chain a
23S rRNA

Nearby chains

Chain 1
50S ribosomal protein L34
Chain 2
50S ribosomal protein L35
Chain k
50S ribosomal protein L15
Chain w
50S ribosomal protein L28

Coloring options:


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