3D structure

PDB id
7K00 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Bacterial Ribosome at 2 Angstrom Resolution
Experimental method
ELECTRON MICROSCOPY
Resolution
1.98 Å

Loop

Sequence
CGAGG*CGUAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7K00_112 not in the Motif Atlas
Homologous match to IL_5J7L_293
Geometric discrepancy: 0.075
The information below is about IL_5J7L_293
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_17136.7
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
14

Unit IDs

7K00|1|a|C|1357
7K00|1|a|G|1358
7K00|1|a|A|1359
7K00|1|a|G|1360
7K00|1|a|G|1361
*
7K00|1|a|C|1370
7K00|1|a|G|1371
7K00|1|a|U|1372
7K00|1|a|A|1373
7K00|1|a|G|1374

Current chains

Chain a
23S rRNA

Nearby chains

Chain 1
50S ribosomal protein L34
Chain c
50S ribosomal protein L2
Chain w
50S ribosomal protein L28

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1102 s