IL_7K00_127

3D structure

PDB id

7K00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome at 2 Angstrom Resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

1.98 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

7K00|1|a|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7K00_127 not in the Motif Atlas

Geometric match to IL_5J7L_308

Geometric discrepancy: 0.0468

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7K00|1|a|C|1686
7K00|1|a|G|1687
7K00|1|a|U|1688
7K00|1|a|A|1689
7K00|1|a|A|1690
7K00|1|a|C|1691
*
7K00|1|a|G|1696
7K00|1|a|G|1697
7K00|1|a|A|1698
7K00|1|a|G|1699
7K00|1|a|A|1700
7K00|1|a|A|1701
7K00|1|a|G|1702

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain c

50S ribosomal protein L2