IL_7K00_128

3D structure

PDB id

7K00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome at 2 Angstrom Resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

1.98 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

7K00|1|a|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7K00_128 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.0986

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7K00|1|a|U|1712
7K00|1|a|A|1713
7K00|1|a|U|1714
7K00|1|a|G|1715
7K00|1|a|U|1716
7K00|1|a|A|1717
7K00|1|a|G|1718
*
7K00|1|a|U|1742
7K00|1|a|G|1743
7K00|1|a|A|1744
7K00|1|a|A|1745
7K00|1|a|A|1746

Current chains

Chain a

23S rRNA

Nearby chains