3D structure

PDB id
7K00 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Bacterial Ribosome at 2 Angstrom Resolution
Experimental method
ELECTRON MICROSCOPY
Resolution
1.98 Å

Loop

Sequence
AUA*UGUUU
Length
8 nucleotides
Bulged bases
7K00|1|a|U|2491
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7K00_151 not in the Motif Atlas
Homologous match to IL_5J7L_337
Geometric discrepancy: 0.0585
The information below is about IL_5J7L_337
Detailed Annotation
Major groove minor groove platform with extra cWW
Broad Annotation
Major groove minor groove platform with extra cWW
Motif group
IL_51387.2
Basepair signature
cWW-cSH-cWW-cWW
Number of instances in this motif group
20

Unit IDs

7K00|1|a|A|2459
7K00|1|a|U|2460
7K00|1|a|A|2461
*
7K00|1|a|U|2489
7K00|1|a|G|2490
7K00|1|a|U|2491
7K00|1|a|U|2492
7K00|1|a|U|2493

Current chains

Chain a
23S rRNA

Nearby chains

Chain Y
Transfer RNA; tRNA
Chain d
50S ribosomal protein L3
Chain l
50S ribosomal protein L16

Coloring options:


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