IL_7K51_169

3D structure

PDB id

7K51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7K51_169 not in the Motif Atlas

Geometric match to IL_3GM7_004

Geometric discrepancy: 0.1152

The information below is about IL_3GM7_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

7K51|1|3|G|1405
7K51|1|3|U|1406
7K51|1|3|C|1407
*
7K51|1|3|G|1494
7K51|1|3|U|1495
7K51|1|3|C|1496

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain 4

mRNA

Chain 5

Transfer RNA; tRNA

Chain 8

Elongation factor G