3D structure

PDB id
7K52 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Near post-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure III)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
GUAAG*CGUUAUAAC
Length
14 nucleotides
Bulged bases
7K52|1|1|U|102
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7K52_004 not in the Motif Atlas
Homologous match to IL_7RQB_004
Geometric discrepancy: 0.4436
The information below is about IL_7RQB_004
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_45067.2
Basepair signature
cWW-tSS-L-tSH-L-R-R-cWW-L
Number of instances in this motif group
18

Unit IDs

7K52|1|1|G|81
7K52|1|1|U|82
7K52|1|1|A|83
7K52|1|1|A|84
7K52|1|1|G|85
*
7K52|1|1|C|97
7K52|1|1|G|98
7K52|1|1|U|99
7K52|1|1|U|100
7K52|1|1|A|101
7K52|1|1|U|102
7K52|1|1|A|103
7K52|1|1|A|104
7K52|1|1|C|105

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain u
50S ribosomal protein L24
Chain y
50S ribosomal protein L29

Coloring options:


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