IL_7K52_065

3D structure

PDB id

7K52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Near post-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

7K52|1|1|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7K52_065 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.1462

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7K52|1|1|U|1712
7K52|1|1|A|1713
7K52|1|1|U|1714
7K52|1|1|G|1715
7K52|1|1|U|1716
7K52|1|1|A|1717
7K52|1|1|G|1718
*
7K52|1|1|U|1742
7K52|1|1|G|1743
7K52|1|1|A|1744
7K52|1|1|A|1745
7K52|1|1|A|1746

Current chains

Chain 1

23S ribosomal RNA

Nearby chains