IL_7K52_069

3D structure

PDB id

7K52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Near post-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

7K52|1|1|A|1801, 7K52|1|1|C|1816, 7K52|1|1|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7K52_069 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.1302

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7K52|1|1|U|1798
7K52|1|1|G|1799
7K52|1|1|C|1800
7K52|1|1|A|1801
7K52|1|1|A|1802
7K52|1|1|A|1803
7K52|1|1|C|1804
*
7K52|1|1|G|1813
7K52|1|1|G|1814
7K52|1|1|A|1815
7K52|1|1|C|1816
7K52|1|1|G|1817
7K52|1|1|U|1818
7K52|1|1|A|1819
7K52|1|1|U|1820
7K52|1|1|A|1821

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain b

50S ribosomal protein L2