3D structure

PDB id
7K54 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mid-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure II-FS)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GUGGAUG*CUGAAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7K54_001 not in the Motif Atlas
Homologous match to IL_4WF9_001
Geometric discrepancy: 0.0896
The information below is about IL_4WF9_001
Detailed Annotation
Triple sheared with non-canonical cWW
Broad Annotation
Triple sheared
Motif group
IL_04021.2
Basepair signature
cWW-L-R-tSH-tSH-tHS-cWW-cWW
Number of instances in this motif group
7

Unit IDs

7K54|1|1|G|24
7K54|1|1|U|25
7K54|1|1|G|26
7K54|1|1|G|27
7K54|1|1|A|28
7K54|1|1|U|29
7K54|1|1|G|30
*
7K54|1|1|C|510
7K54|1|1|U|511
7K54|1|1|G|512
7K54|1|1|A|513
7K54|1|1|A|514
7K54|1|1|A|515
7K54|1|1|C|516

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain B
50S ribosomal protein L32
Chain q
50S ribosomal protein L20
Chain s
50S ribosomal protein L22

Coloring options:


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