IL_7K54_009

3D structure

PDB id

7K54 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure II-FS)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7K54_009 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.2927

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

7K54|1|1|C|274
7K54|1|1|C|275
7K54|1|1|U|276
7K54|1|1|G|277
7K54|1|1|A|278
7K54|1|1|A|279
7K54|1|1|U|280
7K54|1|1|C|281
*
7K54|1|1|G|359
7K54|1|1|U|360
7K54|1|1|G|361
7K54|1|1|A|362
7K54|1|1|G|363

Current chains

Chain 1

23S ribosomal RNA

Nearby chains