IL_7K54_180

3D structure

PDB id

7K54 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure II-FS)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

7K54|1|1|U|846, 7K54|1|1|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7K54_180 not in the Motif Atlas

Homologous match to IL_5J7L_399

Geometric discrepancy: 0.3056

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

7K54|1|1|A|844
7K54|1|1|A|845
7K54|1|1|U|846
7K54|1|1|U|847
7K54|1|1|C|848
*
7K54|1|1|G|930
7K54|1|1|U|931
7K54|1|1|U|932
7K54|1|1|A|933
7K54|1|1|U|934

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain z

50S ribosomal protein L30