IL_7K5I_013

3D structure

PDB id

7K5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-COV-2 nsp1 in complex with human 40S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUACUU*AUGCCGAC

Length

14 nucleotides

Bulged bases

7K5I|1|2|C|142

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7K5I|1|2|G|130
7K5I|1|2|U|140
7K5I|1|2|A|141
7K5I|1|2|C|142
7K5I|1|2|U|143
7K5I|1|2|U|144
*
7K5I|1|2|A|175
7K5I|1|2|U|176
7K5I|1|2|G|177
7K5I|1|2|C|178
7K5I|1|2|C|179
7K5I|1|2|G|180
7K5I|1|2|A|181
7K5I|1|2|C|182

Current chains

Chain 2

40S ribosomal rRNA18S

Nearby chains

Chain G

40S ribosomal protein S6