IL_7K5I_022

3D structure

PDB id

7K5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-COV-2 nsp1 in complex with human 40S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

7K5I|1|2|U|368, 7K5I|1|2|C|369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7K5I_022 not in the Motif Atlas

Geometric match to IL_5Y58_001

Geometric discrepancy: 0.3016

The information below is about IL_5Y58_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37738.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

7K5I|1|2|U|366
7K5I|1|2|U|367
7K5I|1|2|U|368
7K5I|1|2|C|369
7K5I|1|2|G|370
7K5I|1|2|A|371
*
7K5I|1|2|U|393
7K5I|1|2|G|394

Current chains

Chain 2

40S ribosomal rRNA18S

Nearby chains

Chain I

40S ribosomal protein S8

Chain L

40S ribosomal protein S11