IL_7K5I_031

3D structure

PDB id

7K5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-COV-2 nsp1 in complex with human 40S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAG*CGAGGAUC

Length

11 nucleotides

Bulged bases

7K5I|1|2|A|590

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7K5I|1|2|G|563
7K5I|1|2|A|564
7K5I|1|2|G|565
*
7K5I|1|2|C|585
7K5I|1|2|G|586
7K5I|1|2|A|587
7K5I|1|2|G|588
7K5I|1|2|G|589
7K5I|1|2|A|590
7K5I|1|2|U|591
7K5I|1|2|C|592

Current chains

Chain 2

40S ribosomal rRNA18S

Nearby chains

Chain J

40S ribosomal protein S9

Chain e

40S ribosomal protein S30