IL_7K5I_034

3D structure

PDB id

7K5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-COV-2 nsp1 in complex with human 40S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

7K5I|1|2|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7K5I_034 not in the Motif Atlas

Homologous match to IL_4V88_414

Geometric discrepancy: 0.432

The information below is about IL_4V88_414

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7K5I|1|2|G|606
7K5I|1|2|U|607
7K5I|1|2|C|608
*
7K5I|1|2|G|635
7K5I|1|2|C|636

Current chains

Chain 2

40S ribosomal rRNA18S

Nearby chains

Chain 1

SARS-COV-2 Nsp1

Chain D

40S ribosomal protein S3

Chain J

40S ribosomal protein S9

Chain e

40S ribosomal protein S30