IL_7K5I_040

3D structure

PDB id

7K5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-COV-2 nsp1 in complex with human 40S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCUC*GAA

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7K5I_040 not in the Motif Atlas

Geometric match to IL_4V9F_053

Geometric discrepancy: 0.281

The information below is about IL_4V9F_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49140.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

7K5I|1|2|U|747
7K5I|1|2|C|748
7K5I|1|2|U|749
7K5I|1|2|C|750
*
7K5I|1|2|G|793
7K5I|1|2|A|794
7K5I|1|2|A|795

Current chains

Chain 2

40S ribosomal rRNA18S

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain G

40S ribosomal protein S6

Chain H

40S ribosomal protein S7