IL_7K5I_080

3D structure

PDB id

7K5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-COV-2 nsp1 in complex with human 40S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7K5I_080 not in the Motif Atlas

Homologous match to IL_8C3A_469

Geometric discrepancy: 0.1375

The information below is about IL_8C3A_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10092.1

Basepair signature

cWW-tSH-tSH-L-R-cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

7K5I|1|2|G|1604
7K5I|1|2|G|1605
7K5I|1|2|G|1606
7K5I|1|2|A|1607
7K5I|1|2|U|1608
7K5I|1|2|C|1609
7K5I|1|2|G|1610
*
7K5I|1|2|C|1629
7K5I|1|2|A|1630
7K5I|1|2|U|1631
7K5I|1|2|G|1632
7K5I|1|2|A|1633
7K5I|1|2|A|1634
7K5I|1|2|C|1635

Current chains

Chain 2

40S ribosomal rRNA18S

Nearby chains

Chain S

40S ribosomal protein S18

Chain T

40S ribosomal protein S19