IL_7K5I_097

3D structure

PDB id

7K5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-COV-2 nsp1 in complex with human 40S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUG*UA

Length

5 nucleotides

Bulged bases

7K5I|1|2|U|1721

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7K5I_097 not in the Motif Atlas

Homologous match to IL_8P9A_458

Geometric discrepancy: 0.3502

The information below is about IL_8P9A_458

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

7K5I|1|2|U|1720
7K5I|1|2|U|1721
7K5I|1|2|G|1722
*
7K5I|1|2|U|1812
7K5I|1|2|A|1813

Current chains

Chain 2

40S ribosomal rRNA18S

Nearby chains

Chain X

40S ribosomal protein S23

Chain h

60S ribosomal protein L41